YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TVP18_DEBHA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNISSVFS NLFAGFSSDF KKKNFSLYGQ WIGLLTIFLC IALGIANIFH ASVVIVFSII  60
   61 CIVQGLVVVF VEIPFLLKIC PLTDKFTTFI RNFDENWPRC GFYILMGAIQ WLSLTVQVTS 120
  121 LIVVAVFFTL AGICYALAAF MHQEYLKTSF NVAGEPDSLE GQVGDHIVRN VL

Type	Start	End	Confidence
Cytoplasmic	1	26	0.96
Transmembrane Helix	27	48	0.91
Non-Cytoplasmic	49	53	0.71
Transmembrane Helix	54	76	0.91
Cytoplasmic	77	95	0.89
Transmembrane Helix	96	114	0.75
Non-Cytoplasmic	115	120	0.60
Transmembrane Helix	121	141	0.92
Cytoplasmic	142	172	0.80