YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50415065, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKEVKFIVW GHVMLVMFLV WYTFDLITLL HDDSFSDALL DVELNPTNGV LDKPTIIPKI  60
   61 IHQTYKTNQI PEIWKPGQQA CVDLHPDYQY ILWTDDMSRE FIAEEYPWFL ETWDSYPYPI 120
  121 QRADAIRYFA LVHYGGVYID LDDGCERRLD PLLTVSAFVR KTIPTGISND VMGSVPRHPF 180
  181 FLKVLDSLKP YKKNWLVPYV TIMYTTGPLF LSVIWKQYKR WGVPEAGKVR ILLPEDYKTH 240
  241 KYSFFAIAPG SSWHLDDAKF VKSLANHIGL AVFGGFVIAG IFFFLEYLLY LLVISNGFKK 300
  301 LMKKFTSLFT PLNKYMPLNS RSKTLKKRAR KDSNLPAEVD FDNDKAMV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.80
Transmembrane Helix	8	29	0.85
Non-Cytoplasmic	30	269	0.74
Transmembrane Helix	270	294	0.86
Cytoplasmic	295	348	0.75