YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50413441, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFLSAKSLL YARVLLLAVL AFFCIKDPSV LLESGFAVLL GQAMQLNIVL VDSSNPLLGI  60
   61 TAVAFATLAI SDFIPLLADN IEYFETIVPT RLFLYFGLAA YSYVTSSPFF SSNVIFVYSF 120
  121 FEIWFNFLIY NNLRDERYYR IKKFIEENGD KLNLDEAVKV AEVD

Type	Start	End	Confidence
Cytoplasmic	1	8	0.90
Transmembrane Helix	9	30	0.82
Non-Cytoplasmic	31	56	0.78
Transmembrane Helix	57	77	0.87
Cytoplasmic	78	86	0.77
Transmembrane Helix	87	105	0.80
Non-Cytoplasmic	106	113	0.59
Transmembrane Helix	114	133	0.76
Cytoplasmic	134	164	0.81