YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50412505, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNDNSLNLQ STYSDTLKPT QTKEKTNNTN FHSGINTNNN NNNNNNNNNN SNIKNSPLPS  60
   61 NSIYNGHFLY SSHPNSSPLI HTFNSEWVDT PDNSPSRTKP YNQDMSTTIL ADPASVAPQQ 120
  121 NEDSSNKSKF ETPSKAKASI SFITPVTDSK AYDTIILNEK HLKPSSPEPV KEHNVESMDI 180
  181 LWAMLHNITG KDKLAKFGQF TLRLLLYHAK QTQNYLSDGY ININVINSRY NDKEKKLNLL 240
  241 KNFLHHPRDF IKIIVLLACS IFRSRLSGTA GGLSLFRQFL RFGQSPFKTR RFKNKLVSRT 300
  301 TIATKSGDYM IDVSSIGKCF TKDVLGDIFS LYYSVFDEAG LLYKMNFFRS KSFHKVILRH 360
  361 ESLAWYYETL LGIYNAYGRL QKLSQQEMDL KIQIQVKSKA RLLSKQLLGA SSIEGLSHED 420
  421 DTKDAQQLKE IQFKKYNSYI DIYKWLSDFI FNTYTVFNMA LPFDTLQLWM GISASSLSIL 480
  481 KLYRETRKRL IAESLRK

Type	Start	End	Confidence
Non-Cytoplasmic	1	464	0.91
Transmembrane Helix	465	483	0.55
Cytoplasmic	484	497	0.59