YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49652523, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	221	0.65
Transmembrane Helix	222	242	0.56
Non-Cytoplasmic	243	259	0.84
Transmembrane Helix	260	282	0.89
Cytoplasmic	283	291	0.89
Transmembrane Helix	292	311	0.95
Non-Cytoplasmic	312	319	0.70
Transmembrane Helix	320	343	0.86
Cytoplasmic	344	350	0.91
Transmembrane Helix	351	373	0.90
Non-Cytoplasmic	374	380	0.82
Transmembrane Helix	381	401	0.96
Cytoplasmic	402	452	0.97
Transmembrane Helix	453	474	0.88
Non-Cytoplasmic	475	496	0.77
Transmembrane Helix	497	517	0.94
Cytoplasmic	518	535	0.93
Transmembrane Helix	536	557	0.92
Non-Cytoplasmic	558	563	0.85
Transmembrane Helix	564	583	0.94
Cytoplasmic	584	596	0.79
Transmembrane Helix	597	620	0.80
Non-Cytoplasmic	621	633	0.81
Transmembrane Helix	634	655	0.93
Cytoplasmic	656	707	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSSDLTNK DSSFLQEDSN YDEPNKQDRL ELKSINLLAS SLNSSREGSP LREPIVYDND  60
   61 VHDSNSRIRR RSSVGSKSDR GRSHSFITLG TDYLHGSRHS MGSQHSLSRY STSYCVKEIY 120
  121 GDMPEEDIMI QRTATKSTIL NSLSKRVENA NIEAERGENL DKESKVEEDV SEEDRLYQEV 180
  181 PDIPVPTTKF GGEFSSIDPE LVTWEGTDDP EYPRNWPVRS KILQTAIVSI YTLVPPMSSS 240
  241 VCSPAMPDIA ESLGMNSQFL QSFSVSIMVL AWALGPIIIA PLSESDKIGR RWVLNISVWI 300
  301 SFIFNLACAF AKTTTQLCVF RFLGGLGGAA PLNVGAGTIA DLWDDRGRQF AMAAYSISPS 360
  361 LGPVISPIMS GFIVENTHWK WVFIVLAILN GVVAAVGTLL FKETYSPKLL SLKAKRLREE 420
  421 TGNSHLHTIF EIANGETTSE KVMSTVTRPL QLLFSHPMCF GLGSFMAFIY GFMYLMVVTF 480
  481 PSVFERNYGF SVGISGLMFL PMGIGYVVGI AFWTWLIDYF YIKLTEKNNG VSKPEYRLPC 540
  541 LCFAGIGIPI GLVWYGWSAE KKIHWIMPAI GSAIFAFSYI PVFQTIQNYL IDMNTRLSAS 600
  601 SIASCSIYRS VFGFALPLAA NPMYEKLNYG WGNTMCAFIA FALGIPFPIF CLIYGERLRD 660
  661 WANRRLDKKQ AARDARNLKR LQQQNEMEFA KMDKSQLVTD SSFLKTD