YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50408565, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIDNYQQQ VRRNEYSSMG EGHTLNIEGL TKSANELPNT PYPAWFFSAV LLYKGVTTHK  60
   61 PIANSTGTSG GSAKFSQWLS LSKPSRLSCF TFGAAHLLGG WIIYDGDLAN GAGFNFAWST 120
  121 LYLIVNGTSS VKSLTLGRLN PIGLSMLALG NVGMYGKKFF WH

Type	Start	End	Confidence
Cytoplasmic	1	84	0.94
Transmembrane Helix	85	104	0.87
Non-Cytoplasmic	105	111	0.73
Transmembrane Helix	112	130	0.60
Cytoplasmic	131	135	0.44
Transmembrane Helix	136	156	0.70
Non-Cytoplasmic	157	162	0.40