YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18139844
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIIAVTGC PTGIAHTFMA EEALKTAAKK LNIEIKVETN GASGVENAIT PADLKDIYGV  60
   61 IIAADKDVNA ERFNGLPVIE VPVKEAIHHP ADLINKFISG QAARRQGISA SADSTEKSER 120
  121 EFFGPKVYKH LMSGVSNMLP FVVAGGILIA ISFLWGIYSA DPNSPQYNVI AATLMKVGST 180
  181 GLSQFMVRIF TAYMAWSNSG RPGNGARALS VGYKPNATAR QAFLGGIIAG SRRRGYFMLL 240
  241 LRNMLNGLPR QYEGLKSIFI MPLVGVPVIG VMMVLLGQPV AAINNAMMNW LSSLQEANPI 300
  301 LLGIVVGAMC SFDFGGPVNK AAYVTGTLLL GQGNYFFMAG VSAACITPPL VIALATTFFP 360
  361 KGFSEEERAA GMVNYIPGCT ILLEGAIPFA AKDPLRVIPR RRTASTISTG LTMPLKIQGA 420
  421 SSISAVLSYS LQIQVPAPHG GFLILPLVSK PLMWVLCILA GSACGAVMLG CWRLWQKRNQ 480
  481 EATTLAGAIK

Type	Start	End	Confidence
Cytoplasmic	1	137	0.90
Transmembrane Helix	138	158	0.93
Non-Cytoplasmic	159	168	0.82
Transmembrane Helix	169	192	0.71
Cytoplasmic	193	257	0.78
Transmembrane Helix	258	281	0.89
Non-Cytoplasmic	282	296	0.84
Transmembrane Helix	297	318	0.83
Cytoplasmic	319	334	0.70
Transmembrane Helix	335	356	0.92
Non-Cytoplasmic	357	370	0.74
Transmembrane Helix	371	391	0.80
Cytoplasmic	392	411	0.82
Transmembrane Helix	412	433	0.79
Non-Cytoplasmic	434	451	0.87
Transmembrane Helix	452	472	0.96
Cytoplasmic	473	490	0.90