YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42407287
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.70
Transmembrane Helix	7	27	0.88
Non-Cytoplasmic	28	47	0.71
Transmembrane Helix	48	69	0.69
Cytoplasmic	70	80	0.45
Transmembrane Helix	81	104	0.88
Non-Cytoplasmic	105	114	0.53
Transmembrane Helix	115	138	0.89
Cytoplasmic	139	180	0.52
Transmembrane Helix	181	203	0.87
Non-Cytoplasmic	204	220	0.48
Transmembrane Helix	221	246	0.85
Cytoplasmic	247	301	0.45
Transmembrane Helix	302	320	0.37
Non-Cytoplasmic	321	321	0.37
Transmembrane Helix	322	343	0.79
Cytoplasmic	344	405	0.81
Transmembrane Helix	406	428	0.86
Non-Cytoplasmic	429	708	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLWKAVVVT LAFVSMDVGV TTAIYAFSHL DRSLLEDIRH FNIFDSVLDL WAACLYRSCL  60
   61 LLGATIGVAK NSALGPRRLR ASWLVITLVC LFVGIYAMAK LLLFSEVRRP IRDPWFWALF 120
  121 VWTYISLAAS FLLWGLLATV RPDAEALEPG NEGFHGEGGA PAEQASGATL QKLLSYTKPD 180
  181 VAFLVAASFF LIVAALGETF LPYYTGRAID SIVIQKSMDQ FTTAVVVVCL LAIGSSLAAG 240
  241 IRGGIFTLVF ARLNIRLRNC LFRSLVSQET SFFDENRTGD LISRLTSDTT MVSDLVSQNI 300
  301 NIFLRNTVKV TGVVVFMFSL SWQLSLVTFM GFPIIMMVSN IYGKYYKRLS KEVQSALARA 360
  361 STTAEETISA MKTVRSFANE EEEAEVFLRK LQQVYKLNRK EAAAYMSYVW GSGLTLLVVQ 420
  421 VSILYYGGHL VISGQMSSGN LIAFIIYEFV LGDCMESVGS VYSGLMQGVG AAEKVFEFID 480
  481 RQPTMVHDGR LAPDHLEGRV DFENVTFTYR TRPHTQVLQN VSFSLSPGKV TALVGPSGSG 540
  541 KSSCVNILEN FYPLQGGRVL LDGEPIGAYD HKYLHRVISL VSQEPVLFAR SITDNISYGL 600
  601 PTVPFEMVVE AAQKANAHGF IMELQDGYST ETGEKGAQLS GGQKQRVAMA RALVRNPPVL 660
  661 ILDEATSALD AESEYLSEAQ TPGLEHTPHP ATTAWLEATL SPKPGCQG