YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49903285
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQTHTSASKG FKMAVFAVLF SAVMLLAIVP AWTEKHSLYY IYTALSRPVN LPGIHEFTAM  60
   61 GLLDDRQIDY YNSQEQKKIP KQPWMKEKMQ EDYWEKGTQS RKSKEQWFNV NVNILMERMR 120
  121 HNKSDVHVLQ WRHGCEIESQ DNNVRFSKGI DEYSYDGENF LSFDDADSQW VAPVDAALPT 180
  181 KRKWDNVPIL NQYTKGYLEK ECVDWLNKFR EYGDEELKQG SAPKVHVFAK RYVNGKAKLK 240
  241 LTCLATGFYP KDVYLTIRKY RTALSDSEVE SSGVRPNHDG TFQLRKSTYI LEEEKAEYDC 300
  301 YVAHRTLNAP VVTTWDGKCS DCSKESAIGL IVGAIIGAVV VAAIVVVAFI LKKNNKFCFR 360
  361 TTQEPSEENG RVLMKDPVFK EENGAGKDPS VVPLTNGNH

Type	Start	End	Confidence
Cytoplasmic	1	10	0.89
Transmembrane Helix	11	32	0.90
Non-Cytoplasmic	33	327	0.94
Transmembrane Helix	328	351	0.92
Cytoplasmic	352	399	0.93