YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47938724, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRRLVPVG WGAGWTPLAI LRQIGSLPIQ SFPKEVKIVE VGPRDGLQNE KTVVPTDVKI  60
   61 HLINMLSEAG LQAIEATSFV SPKWVPQMAD HKNVMQGIKK YPNISYPVLT PNLTGFQAAV 120
  121 ECGAKEVAIF GAASELFSKK NINCSIDESL QRFKAVITEA KEANIPVRGY VSCVLGCPYE 180
  181 GKVAPSKVAE VAYKMFSMGC YEISLGDTIG VGTPGGMRDM LSAVLDVVPA KALAVHCHDT 240
  241 YGQALANILV ALQMGVQVVD ASVAGLGGCP YAQGASGNVA TEDVVYMLHG LGIQTGIDLK 300
  301 KLTEAGAFIC KALGKKSHSK VSQAICKL

Type	Start	End	Confidence
Signal Peptide	1	19	0.39
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	328	0.98