YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147904930, gi...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPMELYCW KGDWGLPSVD PDCLTVLTYA KFSGAPLKVH KITNPWRSPS GRLPALKTSD  60
   61 DGVLFQPSRI ITHLRKQKYN ADYDLSARQG ADTLAFISLL EEKLLPALIH SFWVEGKNYV 120
  121 EHTRKWYAES IPFPLNFFLP NQMHKRNMER LKLIRGESWR EEDEEMEGRL YTDAHECLSL 180
  181 LSQRLANNNF FFGDSPASLD AYVFSHLAPI LNAKLPNNKL QQHLSSLPNL CRYCTSIITV 240
  241 YFPWEQESGP RVAPKPPSAE TQDTEDDPHK RRNQVLSVLA GLLAMVGYAV LSGIVSIQRV 300
  301 APDHALEQGI TMEDNEEEEE

Type	Start	End	Confidence
Cytoplasmic	1	274	0.52
Transmembrane Helix	275	297	0.73
Non-Cytoplasmic	298	320	0.67