YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ABHDD_XENLA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKHWVLWSC AERWLLALAS WSWGLCRICL LPLILTFNMY GGVILLLLIF VSIAGILFKF  60
   61 QDVLLYFPDQ PSSSRLYIPM PTGIPHENIF IKTKDNIRLN LILLRYTGDN SSFSPTIIYF 120
  121 HGNAGNIGHR LPNALLMLVN LKVNLILVDY RGYGKSDGEP SEEGLYMDSE AVLDYVMTRP 180
  181 DIDKTKIILF GRSLGGAVAI HLASENAHRI CALVLENTFL SIPHMASTLF SVLPMRYLPL 240
  241 WCYKNKFLSY RKIVQCRMPS LFISGLSDQL IPPFMMKQLY ELSPSRTKRL AIFPDGTHND 300
  301 TWQCQGYFTA LEQFIKELNS NHCPEANAKT SNVTII

Type	Start	End	Confidence
Cytoplasmic	1	13	0.79
Transmembrane Helix	14	35	0.85
Non-Cytoplasmic	36	39	0.58
Transmembrane Helix	40	60	0.88
Cytoplasmic	61	187	0.75
Transmembrane Helix	188	204	0.42
Non-Cytoplasmic	205	219	0.56
Transmembrane Helix	220	238	0.44
Cytoplasmic	239	336	0.60