YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49903711, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEENMEEGQT QKGCSECCLK CLSGIPYASL IATILLYAGV ALFCGCGHEA LSGTVTILQT  60
   61 YFDVVRSPVD ALDVFTMIDI FKYVIYGVAA AFFVYGILLM VEGFFTTGAI RDLYGDFKIT 120
  121 TCGRCVSAWF IMLTYIFMLA WLGVTAFTSL PVFMYFNIWN TCQNMTLLEG SLSSANSANL 180
  181 CFDLRQYGIV SIGEEKRLCA DNENFKKMCE SNELDLTFHL FVCALAGAGA AVIAMVHYLM 240
  241 VLSANWAYVK DACRMQKYED IKSKEEQELH DIHSTRSKER LNAYT

Type	Start	End	Confidence
Cytoplasmic	1	28	0.88
Transmembrane Helix	29	51	0.80
Non-Cytoplasmic	52	83	0.90
Transmembrane Helix	84	106	0.90
Cytoplasmic	107	125	0.82
Transmembrane Helix	126	150	0.85
Non-Cytoplasmic	151	217	0.88
Transmembrane Helix	218	241	0.86
Cytoplasmic	242	285	0.85