YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47939726
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEGGKGTVSF PTAVPPALRM GGPDRTGCRH LLLLILVSVS RVCADKTPPE LPPQDSWGDL  60
   61 WLVRFFLNIA GYGTILLPGY LLIHYFKRKN YLETGRGLCY PVVKSCVFGD ESKSSAPEET 120
  121 AAAPRVEGDP STTQQALKLL FCAAGLQVSY LTWGVLQERV MTRTYGSEEG GPGERFRDSQ 180
  181 FLVFMNRILA LTVAGLYCSV TKQPRHGAPM YKYSFASLSN ILSSWCQYEA LKFISFPTQV 240
  241 LAKASKVIPV MLMGKLVSHK SYEYWEYLTA VLISVGVSMF LLSNGGGDRP WGVTTFSGVV 300
  301 ILAGYIVFDS FTSNWQDSLF KYKMSSVQMM FGVNLFSCLF TVGSLLEQGA LLEDIHFMNR 360
  361 HPDFAFHAAL LSVCSAFGQL FIFYTINKFG AAIFTIIMTL RQALAILLSC LLYGHPVTAV 420
  421 GGVGVAIVFL ALFLRVYARG RMRKKVRKTA DTPVVQKV

Type	Start	End	Confidence
Cytoplasmic	1	25	0.74
Transmembrane Helix	26	44	0.61
Non-Cytoplasmic	45	61	0.82
Transmembrane Helix	62	86	0.83
Cytoplasmic	87	263	0.79
Transmembrane Helix	264	283	0.94
Non-Cytoplasmic	284	290	0.80
Transmembrane Helix	291	312	0.89
Cytoplasmic	313	326	0.87
Transmembrane Helix	327	346	0.89
Non-Cytoplasmic	347	363	0.83
Transmembrane Helix	364	384	0.94
Cytoplasmic	385	390	0.78
Transmembrane Helix	391	412	0.89
Non-Cytoplasmic	413	417	0.71
Transmembrane Helix	418	438	0.94
Cytoplasmic	439	458	0.99