YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47718042
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.73
Transmembrane Helix	27	50	0.90
Non-Cytoplasmic	51	209	0.77
Transmembrane Helix	210	229	0.96
Cytoplasmic	230	235	0.75
Transmembrane Helix	236	260	0.89
Non-Cytoplasmic	261	283	0.87
Transmembrane Helix	284	305	0.93
Cytoplasmic	306	311	0.76
Transmembrane Helix	312	332	0.64
Non-Cytoplasmic	333	334	0.41
Transmembrane Helix	335	359	0.76
Cytoplasmic	360	379	0.47
Transmembrane Helix	380	403	0.80
Non-Cytoplasmic	404	430	0.47
Transmembrane Helix	431	451	0.64
Cytoplasmic	452	533	0.71
Transmembrane Helix	534	555	0.90
Non-Cytoplasmic	556	562	0.61
Transmembrane Helix	563	584	0.93
Cytoplasmic	585	651	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCCGSTQNS KRDWRPLEEH SCTDIPWLLL FILFCVGMGF ICGFSIATGA ASRLVFGYDS  60
   61 YGNICGQKNT KIEGFINSGL DHSNNKYVFF LDPCKLDLVN RKIKSIALCV SECPREELQT 120
  121 LNDVKKFAET NGSALCDYSL TPSQYTTDSR APSLCPKLPV PKSAPIPFFH RCAPVNISCY 180
  181 AKFAEALITF VSDNSVLHRL ISGVMTSKEI IMGLCLLSLV LSMILMVIIR YISRVLVWII 240
  241 TILVVLGSLG GTGVLWWLYA DNKKSLNENL PPDQLQVSKD NLQALLVYAI AATVFTVILL 300
  301 LMMLIMRKRV ALTIALFNVA GKVFIHLPLL VFQPFWTFFA LLLFWVYWVM VLLFLGTAGD 360
  361 PFTNEQGFVE FQINGPLQYM WWYHLVGLIW ISEFILACQQ MTIAGAVVTY YFTRNKNDLP 420
  421 FTPILASVNR LIRYHLGTVA KGAFIITLVK IPRMILMYIH SQLKGKENAC ARCMLKSCIC 480
  481 CLWCLEKCLA YLNQNAYTAT AINSTNFCTS AKDALVILVE NALRVAAINT VGDFMLFLGK 540
  541 ILIVSCTGLA GIMLLNYQRD YTVWVLPLII VCLFAFLVAH CFLSIYEMVV DVLFLCFAID 600
  601 TKYNDGSPGK EFYMDKVLME FVEDSRRALK EPGSTAEGRE LKPMASGTST A