YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47682572, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSHVLRCC QRVVGWIPVL FITAVACWSY YAFVLELCVF TIPSDAEKAV YMVIFHLFFI  60
   61 MFIWSYWKTI FTRPSNPSKE FCLSKSDKEL YEREERQEFQ LEILKRAAKD LPIYTTTGTR 120
  121 AIRYCDRCQL IKPDRCHHCS TCDVCVLKMD HHCPWVNNCV GFSNYKFFLL FLVYSLLYCL 180
  181 FIAATVLQYF IKFWTNELPD TRAKFHVLFL FFVAAMFFIS ILSLFSYHCW LVGKNRSTIE 240
  241 AFRAPLFRSG PEKDGFSLGF SKNLREVFGD EKKYWLLPVF TSLGDGCSFP TRLVLGDPEQ 300
  301 NAVTVQTDST KPVGPSQTFP ARPLSESQNR LLGSESQWTD NAPGEEHADK GVESHVAVLI 360
  361 ES

Type	Start	End	Confidence
Cytoplasmic	1	12	0.94
Transmembrane Helix	13	34	0.92
Non-Cytoplasmic	35	48	0.89
Transmembrane Helix	49	70	0.88
Cytoplasmic	71	166	0.99
Transmembrane Helix	167	191	0.86
Non-Cytoplasmic	192	206	0.92
Transmembrane Helix	207	230	0.90
Cytoplasmic	231	362	0.97