YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIPF5_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFDNFNTD FYQSSYSVDD QNQGGYGYSN TDEPYKPYGQ YDYSQPMGYS AAPGMMQPQQ  60
   61 PYTGQIYQPT PAFTPTSSQS MYSSSFEDEP PLLEELGINF DHIWQKTLTV LHPLKASDGS 120
  121 IMNETDLAGP MVFCLAFGAT LLLTGKIQFG YVYGISAIGC LGMYCLLNLM SMTGVSFGCV 180
  181 ASVLGYCLLP MIILSSFGVI FSLQGIMGII LTAAIIGWCS LSASKIFISA LAMDGQQLLV 240
  241 AYPCALLYGV FALISVF

Type	Start	End	Confidence
Cytoplasmic	1	124	0.91
Transmembrane Helix	125	144	0.83
Non-Cytoplasmic	145	148	0.71
Transmembrane Helix	149	170	0.83
Cytoplasmic	171	174	0.66
Transmembrane Helix	175	201	0.79
Non-Cytoplasmic	202	205	0.50
Transmembrane Helix	206	228	0.83
Cytoplasmic	229	237	0.72
Transmembrane Helix	238	256	0.90
Non-Cytoplasmic	257	257	0.85