YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32172502
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANGGEGSPM HPSPSEQHSM LHGERVAVQI NSRRRLPDFL QSVNLKYVKL GYHYLITHLV  60
   61 ILLFIPLLLA VTLEVGRMGP EEMWQLWVNL QFNLVSVLIC SALLVFGVTV YVMSRPRPVY 120
  121 LVDYACHLPA ENTRVKFSLF MDHSEKSGFF DERALEFQRK ILERSGLGEE THLPVSLHRL 180
  181 PANANMAEAR NEAEEVMFGA LDELFEKTKV KPKDIGILVV NCSLFNPTPS LSAMIVNKYH 240
  241 MRGNIRTYNL GGMGCSAGVI SIDLAKDMLQ VHGGTYAIVV STENITQNWY YGNRRSMLIP 300
  301 NCLFRVGGAA ILLSNKRSEK RRAKYQLVHT VRTHKGADDK CFRCVYQEED EKNFMGVSLS 360
  361 KDLMAIAGDA LKTNITTLGP LVLPLSEQLL FFGILVARKV FNMKVKPYIP DFKLAFDHFC 420
  421 IHAGGRAVID ELEKNLQLTK DHVEPSRMTL HRFGNTSSSS IWYELNYIES KGRMKKGDRV 480
  481 WQIAFGSGFK CNSAVWQAVR TLKPPARGPW THCIDSYPVK IPEVYKF

Type	Start	End	Confidence
Cytoplasmic	1	53	0.90
Transmembrane Helix	54	73	0.94
Non-Cytoplasmic	74	89	0.84
Transmembrane Helix	90	112	0.90
Cytoplasmic	113	246	0.91
Transmembrane Helix	247	265	0.67
Non-Cytoplasmic	266	296	0.74
Transmembrane Helix	297	314	0.62
Cytoplasmic	315	527	0.75