YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49644714, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNTVGVAV GCAVGIPIGV GIIVAFGFWY RMQRRFKEEE LEHDGHSNFD EEMSFNDMGV  60
   61 MKMQQAGEHV QENEHEVHGN HVSSDETASS SEEKREREVD HTSTQLKNNS STGSISRGKS 120
  121 GKRNIYTPAY RKRLQETVSS IQKPMDFDSS NNTKSTSTSI TSADTPKRQS SQINMFDKMI 180
  181 PMLPDAAVGG NGSGSIFDEG SVPRRNSSNE TLLKTIGTLD LGAYPRRGSS VQISGMNNNN 240
  241 AINNHNINNA DNSIISSRHS LTSLHTHMSS PSTNSKPIIE NVFDTPKGSK VLTLPAENDS 300
  301 SEQYRLQNNY DIRDDHHIAE EDQYENEFTN YSENKREFID SLRPKRQT

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.56
Transmembrane Helix	7	30	0.93
Cytoplasmic	31	348	0.60