YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49644661\|emb\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEKHDAQH HNQQQEKRKA AKDVKEAKET AKNKASHAAH DAHDAVDKAH DEVKKHLDEY  60
   61 EGILKPYWDK LVEIVNAVAS KTVGVTQATV STVAANTSKA TTIVLHELQN PVVAFNTLLG 120
  121 AASITTLLNG YANKRRFLKG KSDKDIALIV SGLSAFIAAD AYVSYYNYKR FDKRH

Type	Start	End	Confidence
Non-Cytoplasmic	1	111	0.57
Transmembrane Helix	112	132	0.53
Cytoplasmic	133	145	0.56
Transmembrane Helix	146	166	0.65
Non-Cytoplasmic	167	175	0.69