YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49645189
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	164	0.95
Transmembrane Helix	165	186	0.79
Non-Cytoplasmic	187	198	0.71
Transmembrane Helix	199	223	0.76
Cytoplasmic	224	236	0.79
Transmembrane Helix	237	258	0.92
Non-Cytoplasmic	259	276	0.88
Transmembrane Helix	277	295	0.93
Cytoplasmic	296	305	0.78
Transmembrane Helix	306	329	0.87
Non-Cytoplasmic	330	338	0.84
Transmembrane Helix	339	362	0.88
Cytoplasmic	363	392	0.92
Transmembrane Helix	393	415	0.87
Non-Cytoplasmic	416	422	0.82
Transmembrane Helix	423	445	0.77
Cytoplasmic	446	463	0.72
Transmembrane Helix	464	486	0.84
Non-Cytoplasmic	487	504	0.84
Transmembrane Helix	505	530	0.72
Cytoplasmic	531	539	0.86
Transmembrane Helix	540	560	0.93
Non-Cytoplasmic	561	568	0.75
Transmembrane Helix	569	593	0.87
Cytoplasmic	594	610	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQFKHTTQ ERRSSIIYSN NNGKGGLFSP QDYISGDKTQ AFIDDDISED SEDSLFATNN  60
   61 SRTLQHEYGS TGRTGSSDSS EIHSALPKNL IREERDLLMD NKLYNSNHAL HNHAAYSTND 120
  121 PNSSFAPTSS IEDQEVIETW EDAIESGKDI NTTFKREAIV ITSNASPLVL TFILQNSLSL 180
  181 ASIFSVSHLG SNELGAVTLG SMTASITGFA AIQGLCTCLD TLCAQAYGGN HYHLVGVLFQ 240
  241 RCAIITIILS LPVLFTWWQW SEQILALFIP ERELCALAAK YLQIVSLGIP AFILFECGKR 300
  301 FLQCQGIFHA SSIVLLVCAP LNALMNYVLV WDKNIGIGYL GAPISVVLNY WLMALGLFAY 360
  361 TLYTKNEKNP MKCWNGFIKP HQILKNSRKM FNLALPGIIM VEAEFLGFEI LTIFASHLGT 420
  421 HELAAQSIIS TIASLAYQVP FSISISTSTR VANFIGASLY RSCVITCKVS LLLSFIISSL 480
  481 NMAMIYKARY LIARLFSSEP DVVRLVSSSL PILAFMQIFD AFNASTAGCL RGQGQQKIGG 540
  541 YINVFAFYCI GIPVSYLLTF HYGFGVSGLW WGITSGLVFM SIFQSYAVFH CNWNDIIRAA 600
  601 KSRNSEGAMV