YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50311559, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTIASIGT AVVSALPTAT INPDDVNYYS GTMPNLRFNC TMAAIFGVLV FCHAFIGAFT  60
   61 KQWWFFVCFI CACVLETIGY VGRALSHQDG GPQADYFIMQ IVCLTIAPVF TMAGIYYQLA 120
  121 KLIEIYGQRY ALLPTPMSYS YIFIVCDIVS LVIQAVGGGT SASAVRELKS TDTGDNIFVA 180
  181 GLAVQVASMT IFLGLWFHFL YEVYIKTRAE YLGISHWKWF QLFKVSRFDV DHLFREKYAM 240
  241 VREGHRWTFH YFNLALTAAV LFVYVRCIYR VAELAQGWNG FLISHEWYFI ILDALMMSLA 300
  301 TVVLTVFHPG FAFMGRSIEI PVTGSKKNQG ENDNESKASL PESNTETNDV KGPVSDEKAG 360
  361 VLPGIFRRKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.54
Transmembrane Helix	36	57	0.88
Cytoplasmic	58	62	0.71
Transmembrane Helix	63	84	0.85
Non-Cytoplasmic	85	95	0.81
Transmembrane Helix	96	119	0.91
Cytoplasmic	120	137	0.80
Transmembrane Helix	138	158	0.90
Non-Cytoplasmic	159	176	0.81
Transmembrane Helix	177	200	0.90
Cytoplasmic	201	246	0.89
Transmembrane Helix	247	268	0.91
Non-Cytoplasmic	269	288	0.80
Transmembrane Helix	289	311	0.90
Cytoplasmic	312	370	0.90