YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49644648\|emb\|...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRVFWLLCP VLFLAPYVLP ISLGTADKDG ILNVYFVKFG WFWTSVISCL CVIRYSNIVN  60
   61 HWKRYLLLTL WWMIFTQEVF GLTPLMDLVF LNSGGICSFD IFSTDGNEQT LNLQFHDNEF 120
  121 RRLRGIRRML NWLGNVHGSE TLLSALNSII SEDSSEYTPE LAAELSELSK LVKSSAGCSY 180
  181 AGGHWVGGHD PSGHIFLITL MLMLMFGELS LYQSRAFRHL QNTYKRFLNR AGSQLLQLLD 240
  241 NSALANLWIH DDHDDDSQWW FKFLFQPPLS CYQTLMTLIY LILRFIIWEN PILLLFTLTA 300
  301 LWSYSFVVTV MLFHTFWEQL SGFVAAYLVC ILVYQFF

Type	Start	End	Confidence
Cytoplasmic	1	4	0.70
Transmembrane Helix	5	25	0.69
Non-Cytoplasmic	26	38	0.81
Transmembrane Helix	39	58	0.91
Cytoplasmic	59	67	0.82
Transmembrane Helix	68	86	0.82
Non-Cytoplasmic	87	191	0.90
Transmembrane Helix	192	212	0.93
Cytoplasmic	213	268	0.63
Transmembrane Helix	269	288	0.66
Non-Cytoplasmic	289	291	0.19
Transmembrane Helix	292	313	0.81
Cytoplasmic	314	314	0.08
Transmembrane Helix	315	336	0.61
Non-Cytoplasmic	337	337	0.34