YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49644424|emb|...
Protein type: Transmembrane
Type Confidence: 0.72
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELQNKRRRV TRACDECRKK KVKCDGKQPC IHCTVYNYEC TYNQPTRRTV TGSNSSNSVG  60
   61 SSIAGTVTVS GKKSGVIGQS SDGFTGGNRS DSGTLSHSKR LGSGFSNHGG VSNSSAASTQ 120
  121 GHHKKYSASK NKQLQIRVSK YEELLRELIP DIPDIDSIDI PTFAQLFHNT TKDINLNEMV 180
  181 QEYNLIAPTE VAPIVTRDRD MSDSFSGTGS ISIGSHLQQN LQPIENVDGS IESHEGKEIK 240
  241 IILPPKPIAI QFIKSTWENC CVLFRFYHRP SFIKQLDLLY ETDPQNYTHE QMQFLPLCYA 300
  301 VMAVGTLFTK TVNRLNVNQQ SPNNINDDDD SNTNNNTNAD INTDTNTPDS NTNNNTNNNT 360
  361 NNNTNNNNNN SSDASTKFLQ DEGYKYFIAA RKLIDITNAR DLNSIQTIVL LFLFLQCSAR 420
  421 LSTSYSYIGV AMRSALREGL HRKIKPDPSK TKTNFIEIEM RKRLFYTIYK MDIYINTMLG 480
  481 LPRTISPRDF DQELPLELND DYITEDAIYP EEQGDVLSSA GIANQHTKIL MILDQIMADL 540
  541 YPIKKTNNLI SHQMVTNLEL KLRQWLDQLP PELIPGLKDV PERYLRANCL LHLSFLQVQI 600
  601 ILYRPFIHYL SPSAPQTDTL SIQRAKNCIS VARTVVKLAK EMMDAKILPG SYWFSIYTIF 660
  661 FSVAALIYYV RELTPTNSQD IATYDEIMND VRNGKQVLLQ LKETSMAASR TYNLLTALFN 720
  721 SFNAKTKQSV EMQKKVQQEQ QAATTKFEDS SDFGGTFFDL PIDDSNENAV ISPDRSVDTL 780
  781 ERQIPTPNFL TNTFPVEPNT SISGVNTLNT SQTANLFSST NFGASLDPVE NNMDRYLPVD 840
  841 SNQNKQSLQQ TPQYISTTTP NQIPDSAVDG TYVPGMFDQL DVQLFGRYLP PYMSGVTAND 900
  901 SKTKEEPLDD TKTDTI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle