YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49644037
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.76
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYTFTGLLL LLVASFGVEA QLITSTLTSI NVAGATVTLV TVIDSATIAA AAAATAVTTT  60
   61 TPTTAALAAG ATTASTSTTG STTTTTPVAA AAAATDTDTT SVATTTAAVV ANAADTASST 120
  121 TASTTSAATA AAATGTRPDP STSMTPLPSG VGTPIDSYVT LTFGTTSTTT SKRQPTSIWV 180
  181 TKTISGVTTA FETPFYQKFS SQYTAVSSAS SGSVGLGTLS GTVGVVKSKI VTTISGNHAV 240
  241 YFAQSSATMT SMILTVLMMF I

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	204	0.99
Transmembrane Helix	205	226	0.58
Cytoplasmic	227	237	0.53
Transmembrane Helix	238	259	0.68
Non-Cytoplasmic	260	261	0.72