YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49643954, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.88
Transmembrane Helix	48	65	0.79
Non-Cytoplasmic	66	135	0.70
Transmembrane Helix	136	160	0.82
Cytoplasmic	161	172	0.72
Transmembrane Helix	173	193	0.80
Non-Cytoplasmic	194	307	0.78
Transmembrane Helix	308	329	0.73
Cytoplasmic	330	345	0.97
Transmembrane Helix	346	369	0.87
Non-Cytoplasmic	370	380	0.87
Transmembrane Helix	381	400	0.92
Cytoplasmic	401	447	0.95
Transmembrane Helix	448	472	0.84
Non-Cytoplasmic	473	480	0.80
Transmembrane Helix	481	501	0.93
Cytoplasmic	502	511	0.84
Transmembrane Helix	512	533	0.87
Non-Cytoplasmic	534	552	0.76
Transmembrane Helix	553	572	0.95
Cytoplasmic	573	587	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIVSVVQDF FSLETLDQRL TAPTNDSRRK QKLGPEIQSR WSSLEFKAYW LILCIVLPLM  60
   61 LKAGMDATNS WNSNYYKYQH LLSKGWMFGR KVDNSDAQYR FFRDNLLLLV GLMVLHLSIK 120
  121 KAVLQFTNVQ KVTFDFWFGL VFLIGAHGVN CLRVLFHVLV MFTLAKTFKR QRALATLSVW 180
  181 IYGIGSLFIN NSYRNLQYGQ IIPLLKPLDH SFKGIIERWD VFYNFTLLRM ISFDMDFLER 240
  241 WNKIHSNPAT VPASNSVSPE RFEMKRASST QVLETIEENA TKSVLLDERA RLIAPHHIQE 300
  301 YSLMRYLAYV TYTPLFIAGP ILTFNDYLYQ SSHQLPSINF KRILKYALRL LFCLFIMEFL 360
  361 LHFVYVVAVS KTKAWNGDSP FQISMIGLFN LNLIWLKLLI PWRLFRLWAL LDGIDPPENM 420
  421 IRCMNNNFSP VAFWRAWHRS YNKWVIRYIY IPLGGSGNRI ITSFAVFSFV AIWHDIELKL 480
  481 LLWGWLVVLF LLPEIMLSRY FNKFSKKPWY RHVCACGAVL NIWMMMIANL FGFCLGHDGI 540
  541 LLFFKEMFGT FDGLLFFAIA NCALFVGVQL MFEFRAQEMR AGIYVKC