YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49643843, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGGTAMADT SWLKPLVSQF NCEGYLLNSG SFRSVNSLIN DTDIWNQTMN YPAWYANCTD  60
   61 SDETSIFIDA LADLSKEFSF VPQKNVFISG NLVIAFVLSG VCIGGWMLFL LLFLLPSTNH 120
  121 NRQKRMVHLY VLYFSIVQTV IWKKTNDEVF EIQYISNYQD SLAFDKMILE VTWSKVVRFF 180
  181 SLVFCNVNWI IVIYYLCSRS RGISRRWRRS MPRWLRDLNA VHWIMSLVVI LCLLHVIFFG 240
  241 IQLFQGENRA QTSISIVFRV SQLSLFTLFL LVTIWYSYHS LKSASASVDH QGMSIFRRLL 300
  301 LFVHEYKEII PLLIYNVAVY MLLYVVAILQ IRQGEPSSHW IHFVIAFLRI LIFVNAWGLI 360
  361 GKLEEREQKV SKKSLLGRKI NNNDRFFVDP KINYGETKQY LSSPNETKLP KRPRLSKSYR 420
  421 NIFHSNGSFR NNDAESSSEF FNLQDMANKN ANKPQFTDRI VSDTESVDTM LTRNVIYDHD 480
  481 AN

Type	Start	End	Confidence
Cytoplasmic	1	87	0.61
Transmembrane Helix	88	113	0.84
Non-Cytoplasmic	114	176	0.79
Transmembrane Helix	177	198	0.95
Cytoplasmic	199	218	0.95
Transmembrane Helix	219	239	0.97
Non-Cytoplasmic	240	255	0.85
Transmembrane Helix	256	278	0.88
Cytoplasmic	279	308	0.95
Transmembrane Helix	309	331	0.87
Non-Cytoplasmic	332	338	0.88
Transmembrane Helix	339	361	0.91
Cytoplasmic	362	482	0.98