YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49643377, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENNPEVNN LRDSLNRWNE SRNAHSQGFN EGAKTIFASW ADSINERAQD VYQRLPLTQQ  60
   61 DLTANPEPEW FSLSRTERLS LFVCFILGAV ACFTICVFLF PVLAVQPRKF GLLWSMGSLL 120
  121 FIFAFGVLQG PVAYMRHLTS RERLPFTVFF FVSCFLTIYF AAFTKSTLLT IPCAILELIA 180
  181 VIYYAISYFP FGGTGLRMIS SIGLNQARGV LRI

Type	Start	End	Confidence
Cytoplasmic	1	80	0.98
Transmembrane Helix	81	104	0.93
Non-Cytoplasmic	105	111	0.83
Transmembrane Helix	112	133	0.93
Cytoplasmic	134	143	0.87
Transmembrane Helix	144	163	0.94
Non-Cytoplasmic	164	172	0.69
Transmembrane Helix	173	192	0.83
Cytoplasmic	193	213	0.80