YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49643212
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEYREDSIK QLPKVTATET SNTLFTIERI NSNSDEYDEE DVPKMLVDER DDDDSSSFDG  60
   61 DDDDSMDKNR QRRHNKRAKE EYVVIGGKTY MTSDLEQWLA RDHDLENQTE ELTRAKTNVT 120
  121 LLQGELADLD TDHKVYANPL PLGLSSFGFS CLLLSMVNAQ VRGVTNNKIV LGAAIFYGGI 180
  181 IELIAGLFCF PLGDTFGMTV LGAYGGFWLS YSVILTDQFN IVSSYSDDPA MLKNALGLYL 240
  241 TCWTVFTTLC WLCTMKSTWG LFLCFTFLEM TFIMLACSEF LDSVPIAKAG GYFGMFSAMC 300
  301 AFYVLYSGLA NADNSYVPLR QFSLPKTQRV ITSSRV

Type	Start	End	Confidence
Cytoplasmic	1	139	0.78
Transmembrane Helix	140	161	0.65
Non-Cytoplasmic	162	168	0.50
Transmembrane Helix	169	190	0.89
Cytoplasmic	191	195	0.44
Transmembrane Helix	196	215	0.78
Non-Cytoplasmic	216	234	0.55
Transmembrane Helix	235	253	0.92
Cytoplasmic	254	258	0.55
Transmembrane Helix	259	281	0.85
Non-Cytoplasmic	282	288	0.54
Transmembrane Helix	289	310	0.88
Cytoplasmic	311	336	0.65