YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50309197, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKISEFFGN PGYRTDVHQK VPISSTRTVD GLQKISDNDP GHLVEVETSY SSSSVVVGEL  60
   61 EVEENGDIST SIGFTGLEKN RTDIILDWLV ELAGSQIMFV IMMAILVGWI IAGIITSGSY 120
  121 DWQVVMDDGQ SIQSYVWDTL LMRQQLMSAH EHMCICAELG SRVTVFKKLL TRIIDQSEEK 180
  181 NTKAVDHMPE IYEVTADLED SSWYDKLAST VSRVLGSWYS IVIYWCGIIA WVGCGALTID 240
  241 AGNTPPYTGR TSGSNPEMAK FGNLWQMYIN TATAVILYLT TVFLQNIRAR HDIFVAKYIR 300
  301 EIFAMDLKID SLLRKHSNDY TTEADVVTVE AQKRSRGEIW IDWYGDIIGT GVGVLIGILV 360
  361 FTAWIVVGHP MGWSDNWWLI IGTYTGLVGF FDGFVIRQNY FRIVKSEKEN YENVIADDFE 420
  421 LFSILGIPCP EHLAEVPLDE NRSVTYRVSV YINRICSSQL SVLASIIFII ALICIASALK 480
  481 WNETGQLLAN TPTMIIEGFF LLILLQAHNW ADTTRRGEIS LLYNRRNFLF AYLQNRFGEK 540
  541 SQEVKT

Type	Start	End	Confidence
Cytoplasmic	1	96	0.70
Transmembrane Helix	97	116	0.92
Non-Cytoplasmic	117	146	0.64
Transmembrane Helix	147	166	0.62
Cytoplasmic	167	220	0.92
Transmembrane Helix	221	239	0.95
Non-Cytoplasmic	240	263	0.91
Transmembrane Helix	264	284	0.88
Cytoplasmic	285	342	0.96
Transmembrane Helix	343	366	0.93
Non-Cytoplasmic	367	376	0.85
Transmembrane Helix	377	396	0.95
Cytoplasmic	397	459	0.95
Transmembrane Helix	460	479	0.95
Non-Cytoplasmic	480	487	0.81
Transmembrane Helix	488	508	0.88
Cytoplasmic	509	546	0.94