YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50309037, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQNSVLSLH QIKRCLTVDL CCNIFTSFTT LISSHLIALL FNLENFQLTN TKSNKGTARK  60
   61 SAHRTPSAVP DIVISLLGTM SDVISVINRN EFWSNGRLEQ DEYESDSSSG SEQEHDIEMS 120
  121 GAHDSNGGID HQDGSIVTPG ELITDDPIWM KGHGTYFLEN KTYSSVVGTV SRVNRLLSVL 180
  181 PLKSRYIPET GDHIVGRITD VGNRRWKVDI GAKQYAVLML GSVNLPGGVL RRKSETDELQ 240
  241 MRNFLKEGDL LNAEVQSLFQ DGSASLHTRS LKYGKLRNGT FVQVPSSLIV RSKNHTHNLP 300
  301 GNVTIILGVN GFVWIRKSSK MDLSGKTTTT GSGQSDHLPG SNNAMSVSIT RLEEESSWEI 360
  361 YSDKNDTVTV SVRQTITRYA NVIKALAHCE LGITEPRIIS AYEASMAYGN LGQLIESETM 420
  421 ESLGQDVINS EKMRGAA

Type	Start	End	Confidence
Cytoplasmic	1	19	0.76
Transmembrane Helix	20	39	0.81
Non-Cytoplasmic	40	437	0.95