YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50308589, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVFKLVLSL VTLFSSVSFG LDLDVNDLNS LKNATSLVAY GLMDYYTGLQ YGKTIGMFAS  60
   61 PSYWWQAGGA WGSILDYWFY MENDTYNDIL TQALLYQTGD NHDYMPLNQT VTEGNDDQAF 120
  121 WGFAVMAAAE RNYPNPPDDE PQWLYLAQAV FNTMSSRWDM DSCGGGLRWQ IFTWNSGYDY 180
  181 KNSVSNAALF HLSARLARYT GNSSYTEWAE KIYDWMQDIQ LLVDEEPTQY YVYDGASIEE 240
  241 NCTDTVKYQW TYNQGLMLSG SAYLYNFTES ETWHERTKNF LNSSGIFFNN SIMYEAACQG 300
  301 SGYCNNDQRS FKAYFSRFLG LTAQLVPETR DTVLALLQAS AQGAADSCSG GTDGHTCGLN 360
  361 WFYGGWDGKY GLGEQMAALE VMQNLRCLDR PAPYTADDGG TSAGNPAAGT EQSPTNLAPL 420
  421 TIGKGDQAGA GIITAVIGIT IIGSVVWLII

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	427	0.99
Transmembrane Helix	428	449	0.87
Cytoplasmic	450	450	0.91