YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50308561, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTSHERLFR LPFKLPTSVS AKKVCVYVAG ALYGAGLWSF LDCVLYSKHA NGSDLHISFI  60
   61 DWVPMLCSVL GMAIVSSIEK NRLLQDALSS GTFTGSQSTA WQARVVLFLG FSLLASGISG 120
  121 SLVVLIVKFL LKDYTSYPTL GMGINNVLAN LAILLSCTML WIGQNVEDEY NYSLTL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	41	0.85
Non-Cytoplasmic	42	57	0.76
Transmembrane Helix	58	78	0.83
Cytoplasmic	79	104	0.68
Transmembrane Helix	105	127	0.91
Non-Cytoplasmic	128	141	0.54
Transmembrane Helix	142	163	0.86
Cytoplasmic	164	176	0.65