YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49642700, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	74	0.98
Transmembrane Helix	75	98	0.81
Non-Cytoplasmic	99	110	0.84
Transmembrane Helix	111	133	0.87
Cytoplasmic	134	141	0.77
Transmembrane Helix	142	160	0.93
Non-Cytoplasmic	161	167	0.73
Transmembrane Helix	168	188	0.91
Cytoplasmic	189	200	0.74
Transmembrane Helix	201	223	0.92
Non-Cytoplasmic	224	235	0.83
Transmembrane Helix	236	256	0.95
Cytoplasmic	257	304	0.96
Transmembrane Helix	305	328	0.91
Non-Cytoplasmic	329	340	0.89
Transmembrane Helix	341	363	0.88
Cytoplasmic	364	369	0.80
Transmembrane Helix	370	388	0.97
Non-Cytoplasmic	389	394	0.87
Transmembrane Helix	395	416	0.92
Cytoplasmic	417	425	0.80
Transmembrane Helix	426	447	0.85
Non-Cytoplasmic	448	459	0.85
Transmembrane Helix	460	481	0.93
Cytoplasmic	482	521	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPTDMKDQT IEKCESVQDA TTEDVPLQTI LSPSGKVLVL GEAADEAMEF AKHHEHIELS  60
   61 AEEDRKVKRK IDMIVMPLFS FLYMIQFMDK TCISFAAVMG IQTDYKMVDT MYSWTTSCFY 120
  121 LGYLFASPFA AVALQKLPSM RTSAICIVIW GVIQCLHVTA KSYATFTLLR TLLGVLEAFV 180
  181 SPIFVIMMNQ YYKKSEHFGY IGVLYGCNGL GTVILACISY GLYHNLGSYT MEAYKVLFII 240
  241 VGCLTIFNGL LILFIMPNTP ADARFLNDRE KLAVLERIRG NNQGFGSKTF KWHQMKECFM 300
  301 DMRTWLYFLI GISVAIPNGG ISSFGSIILK GFGYSTEKSL LMKAPIGACE LVGLVILPLI 360
  361 SYFISKRMII AVFYLLVCVM STCLLAFSKN KNVALAGYYI TGIAPVGIIT ITSCVASNTA 420
  421 GHTKKLTANA ISLIGYSAGN IVGPQTFRSS DAPNYPKAKA AVVGCYCASI ALMGLMSFLN 480
  481 VRENRRRDKM QEELGDKYVV VENQEFADLT DFENPAFRYS L