YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49642479\|emb\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPSSTNPT GLSFSHLSYL TFESVLQVVI ISFAGFWCAY TGLLPKQGQK IVSLLNVDLF  60
   61 TPCLIFSKLA KSLSLAKILE ISIIPLFYAL TTGISFLSGK LLSYLFGFDV DETNFVVANS 120
  121 IFGNSNSLPV SLTLSLAYTL PDLTWDQIPD DSRDNVASRG ILYLLIFQQI GQVLRWSWGY 180
  181 NKLMRWSEDS VHHNHRISSQ LESQATLGND PNNVSSLSLQ SESTSAASQQ EVNLRESPYY 240
  241 AGTFTKLKQQ TCFYIAKVRS FMNPPLYSML FSVIVASIPP LQHEFFQADG FINNTLSEAI 300
  301 AELGSVSIPL ILIVLGSNLY PSGETAALTK NHKKLVFASI MGRMVLPSCF ILPIIAGCVK 360
  361 FIKVSILDDP IFLVVGFILT VSPPAIQLTQ ITQLNEFFEA EMANVLFWGY VVLTLPISII 420
  421 IVSIAITVLQ WAQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.66
Transmembrane Helix	19	41	0.87
Cytoplasmic	42	77	0.57
Transmembrane Helix	78	102	0.73
Non-Cytoplasmic	103	158	0.52
Transmembrane Helix	159	176	0.54
Cytoplasmic	177	264	0.94
Transmembrane Helix	265	283	0.87
Non-Cytoplasmic	284	298	0.87
Transmembrane Helix	299	320	0.86
Cytoplasmic	321	339	0.79
Transmembrane Helix	340	362	0.86
Non-Cytoplasmic	363	370	0.71
Transmembrane Helix	371	391	0.82
Cytoplasmic	392	405	0.75
Transmembrane Helix	406	429	0.92
Non-Cytoplasmic	430	433	0.72