YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50306337, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSRILPLY SKTDLEKHND KNDCWVSLYQ RKIYNVTEFL DEHPGGAEYI LDYAGTDITD  60
   61 VMKDVLTHEH SESAYEIMDE SYLVGYLATE EEEKKLLTNK DHVVEVNLKG NNEFDSTVFV 120
  121 KELPTEDKLS IATDYQNDYK KHKFLDLNKP LLWQVLFGKF TKDFYLDQVH RPRHYGKGSA 180
  181 PLFGNFLEPL SKTPWWMVPV VWLPVVTYHI YTALMNMNQA FAIFLFAVGV FVWTLIEYGL 240
  241 HRFLFHLDDR LPEKQWAFTL HFLLHGVHHY LPMDRFRLVM PPTLFVVLCT PFYKLVFALL 300
  301 PYYWACAGFA GGMLGYVCYD LTHYFLHHSQ LPPYMRKLKK YHLEHHYKNY ELGFGVTSWF 360
  361 WDKVFGTYLG ENAPLSNMKY D

Type	Start	End	Confidence
Cytoplasmic	1	192	0.86
Transmembrane Helix	193	212	0.89
Non-Cytoplasmic	213	219	0.68
Transmembrane Helix	220	241	0.90
Cytoplasmic	242	277	0.64
Transmembrane Helix	278	297	0.70
Non-Cytoplasmic	298	301	0.52
Transmembrane Helix	302	326	0.78
Cytoplasmic	327	381	0.77