YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49642168
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVLLLGSG FVAQPVVDVL SATDGISVTV ACRTLNKAQA LAKASGSNAI SLDVSDPKQL  60
   61 DAALADHDLV ISLIPYTYHP AVVQSAIRLK KNVVTSSYIS DALRELEPAI KEAGITVMNE 120
  121 IGLDPGIDHL YAVKTIDEVH KVGGKIKSFV SYCGGLPAPE DSDNPLGYKF SWSSRGVLLA 180
  181 LRNSAKYWKD GKIETVSSED LMASAKPYFI YPGYSFVCYP NRDSTLFKEL YHIPEADTVI 240
  241 RGTLRYQGFP EFVKALVDIG MLKDEPNELF ASPQPWNKAL AQYLGAASEK KEDLIKAIDS 300
  301 KTQWKSDDDR ERILSGLAWL GLFSDKPFNA RGNVLDTLCA TLEELMQYEE GERDLVVLQH 360
  361 KFGIEWADGT TETRTSTLVD YGKVGGYSSM AATVGYPVAI ATKFVLDGTI KGPGLVAPYS 420
  421 PAINDPIMKE LKEKYGIYLK EKTIA

Type	Start	End	Confidence
Signal Peptide	1	21	0.96
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	445	0.99