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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49642116, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPTVSDERD RAERIRLSIM GPQTRSSRMS YRISRFKSTH TLYILLLASL AVLQFISIAF  60
   61 FAKGFLLTRT VLDNVAELDP QLPFEAKYDK MVLLIVDALR FDFVIPVDEN HAKYNPNYHN 120
  121 NLKVLYETAH NSTDSVLLKF LADPPTTTLQ RLKGLTTGSL PTFIDAGSNF NGDVIDEDNL 180
  181 IKQLYLHNKK IFFAGDDTWD ALFNPYLAPE SVPYESLNVW DLDTVDNGVI SYLEEYYFNE 240
  241 EKRSEYDILI GHMLGVDHVG HKYGPNHFTM KEKQLQVDEL LRKIISTADD NTLYVVMGDH 300
  301 GMDHTGNHGG DSQDELESVL WLYAKNANWS KDYDSYNTTD LGTSYKQMNQ IDLVPTLSLL 360
  361 LGIPIPFNNL GWPLDEIAND PEELTLYHNI CRNQLEKYLS VSNIIGATAR RDALISVENH 420
  421 PEFQQMFLEI CKDLWARFDF TSICVGIALM AFSLILLLII IKLIPSIVVG QMVGDFVGCV 480
  481 VVISAISNVS FQGIYQVLHQ PAFLDNSLWC SAFATSVGII LGVFIPIFDR YSVQWLCLRL 540
  541 VEELSDYWSR IATLFITLHA LLFTSNSFTI WEDRIVAFLL TTFGMLTLYE FAFLPQRHST 600
  601 AAILSGAGEK QGTLSGKSVG ESNSDSLPLG RFARILGGYH SIVLVLCTRL SSMITICREE 660
  661 QGPYCTPTFT ISNNYSYYTM LGCLFLIPAI PSCIKGYYNV CSSYQAAAPI WIGLILKGSL 720
  721 FASFTYWSLL TIENKFEDLA WDLTIWKYTI SRIIVGISLI ACNIGWMKGP LCVKLNIHNT 780
  781 DLKSQQATIL GYSNVYGSQY FLLVINFLMA IMLFNKPLGQ LSIFLMCNQL LSIIEICDLL 840
  841 KVKESLIGPV ALGLLAYQQF FSTGHQATIP SVQWDMGFIL TEKIIFPWTH LGIVLNTFGP 900
  901 FILVALSVAL LTLWKQPPSV LQPQTILARI VSNSGTLLIY NSVLCLSSFV WVTHFRRHLM 960
  961 VWKIFCPRFL FASLCLIVSQ LVVTFITIGF ASSRLIRQIS QLFSK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle