YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50305863, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSTPYEYS YELDEKKPLN LDSNYVSSFS KYKRYVLWLF SILFILFWLS DFSLVAAEPK  60
   61 VVIIVAVNSG GGGVLKWKSE QEWAIERISI ENKRAYAKRH GYGLVIKDQA LSKRYSHEYR 120
  121 EGWQKVDIMK QTMREFPNAE WFWWLDVETL IMEPQLSLEE HIFDRLDEIA NKTLEAFNPL 180
  181 HIATDVAYVD YSQPSDMLIT QDCGGFNLGS FLMRNTEWTE LLLDIWWDPV GYEQKHMVWE 240
  241 HREQDALEAL YANEPWIREK IAFLPLRQIN AFPPGACADF KYDLRYFYNE KEHDFVVNMA 300
  301 GCNFGRDCWG EMRQYTQLMQ TLHRRWYSMF F

Type	Start	End	Confidence
Cytoplasmic	1	34	0.91
Transmembrane Helix	35	55	0.86
Non-Cytoplasmic	56	331	0.68