YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49641980
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.63
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYKNRLTLA AVLAASVSAA NSTQSVPSSC SIKSDATASS QADLDSYSGC STIVGDLVLT  60
   61 GDLASAALAG VEEIDGSLTI KNATQMTSFS ADSLKKISET LTLNQLTVLD TASFGSLEEV 120
  121 DTISFVTLPA VSNIITKLTS AKQITIADTA LESIAGFEDL DEIEVFNVNN NKGLASIDSK 180
  181 LKHVKTALEI TFNGQSAEIS FDELEWANNI TLRDVSSASF AKLSNVNASL GFINNSLPSI 240
  241 DLSTLEKIGG SLSIVSNEEL TELDFSNLTS VGGGFVIANN SKLATIDTFS ELSTIGGALV 300
  301 VTGKFGDLEF PSLKSVKGGA DIESTASNFS CDALNKLQQK GGIQGDSFVC KDGQTSTSVK 360
  361 LTATGTSDDD DSTATSDSGS AGSSTTSSSK SSGAAAHFNA PGSSVMGAVA AIAYALL

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	393	0.99
Transmembrane Helix	394	416	0.59
Cytoplasmic	417	417	0.62