YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50304027, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKELWYMVY FHLVLLVFIV YTMFDLMALT IDTTFKDALT STDLNPPSTA VQHAQLIPKI  60
   61 IHQTYKTEEI PEHWKDGQRK CIELHPDYKY FLWTDQKSRQ FIQEEYPWFL ETFDNYKYPI 120
  121 QRADAIRYFV LSHFGGIYID LDDGCERRLD PLLTVPAFVR KTSPTGVSND VMGSVPRHPF 180
  181 FLKVLESLKR YDNNWVIPYL TIMLSTGPLF ISLIWKQYKR WGVPENGVVR ILLPSDYKMH 240
  241 ETSFFAISEG SSWHLGDAHF IKSLADYIPL CVVVGFVIAF IIMYAEYRLL CWLITGGAWS 300
  301 RFYNSVIYSL GLSRSRTGNE NVELGQFRRL RKDSNLPTKI CISDIEKQDP KFTDLSHC

Type	Start	End	Confidence
Cytoplasmic	1	7	0.52
Transmembrane Helix	8	29	0.89
Non-Cytoplasmic	30	194	0.54
Transmembrane Helix	195	215	0.89
Cytoplasmic	216	262	0.48
Transmembrane Helix	263	285	0.86
Non-Cytoplasmic	286	288	0.39
Transmembrane Helix	289	307	0.44
Cytoplasmic	308	358	0.67