YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49641796, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANIVESAVQ HLYLQVKDAM DVSFMNSKAP PASVITKKQD ILPWISDGKL ALALPVVAYW  60
   61 LYSMFFHYID TNEVFEQYRI HPSEEVQQRN KASRLEVLKE VILQHFIQTF TGLGMLYLDP 120
  121 VPTSGFEKYE MWKWRQSLPF FVPSVFIKFM YCYGWSMIRI FIGFCIVDSW QYWLHRVMHM 180
  181 NKTLYKKFHS RHHRLYVPYA YGALYNSPVE GFLLDTLGTG IAAIVTQLNH TEQVVLYTFA 240
  241 TLKTVDDHCG YALPLDPFQW LFSNNAVYHD IHHQSFGIKS NFSQPFFTIW DKFCDTKYHG 300
  301 FEEYEKKQRR VTIDKYKEFL NKRKLEHQAK LKAMKEKMS

Type	Start	End	Confidence
Cytoplasmic	1	49	0.78
Transmembrane Helix	50	69	0.45
Non-Cytoplasmic	70	148	0.59
Transmembrane Helix	149	174	0.67
Cytoplasmic	175	339	0.69