YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50304817, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLVPIVLNS QTVSGITGSI SIACWIIVFV PQIYENFYRK SAEGLSLMFV VLWLAGDIFN  60
   61 LLGAMLQHLL PTMIILAAYY TAADIILLIQ CLFYGQDGPV DPVHLSPANP INENVLQDVF 120
  121 HERQPLLTGH QHNERRVYVE TSSTTSEATA PNADKPEDGK LREQLLNIII VSSVILAGFF 180
  181 SWYISYIKNP HQSNPELDLH MNWLAQSFGY LSAVLYLGSR IPQILLNYQR KSCEGVSFLF 240
  241 FLFACLGNTT FIISVLSISF APRYLLVNAS WLIGSSGTLI MDFIIFAQFF VYNKDTQPSA 300
  301 DDLLTV

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.74
Transmembrane Helix	12	34	0.85
Cytoplasmic	35	43	0.74
Transmembrane Helix	44	66	0.84
Non-Cytoplasmic	67	72	0.58
Transmembrane Helix	73	94	0.77
Cytoplasmic	95	164	0.97
Transmembrane Helix	165	186	0.93
Non-Cytoplasmic	187	202	0.87
Transmembrane Helix	203	219	0.91
Cytoplasmic	220	237	0.74
Transmembrane Helix	238	260	0.92
Non-Cytoplasmic	261	268	0.77
Transmembrane Helix	269	291	0.88
Cytoplasmic	292	306	0.93