YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PPA4_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKFDIGSL SIVMTLLICF LLLSLAPKLE AELATVQHAP NPDGSISFLV IGDWGRHGLY  60
   61 NQSQVALQMG RIGEEMDINF VVSTGDNIYD NGMKSIDDPA FQLSFSNIYT SPSLQKPWYL 120
  121 VLGNHDYRGD VEAQLSPILR SMDSRWICMR SFIVDAEIAE LFFVDTTPFV DAYFLSPQDQ 180
  181 TYDWSGVSPR KSYLQTILTE LEMGLRESSA KWKIVVGHHA IKSASIHGNT KELESLLLPI 240
  241 LEANKVDLYM NGHDHCLQHI STSQSPIQFL TSGGGSKAWR GYYNWTTPED MKFFYDGQGF 300
  301 MSVKITRSEL SVVFYDVSGN SLHKWDTSKM LDSDFYFPL

Type	Start	End	Confidence
Signal Peptide	1	31	0.99
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	339	0.99