YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22655054
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLNISSSPI SHRIPHFLSD FNNPTSNFPP KSKTHLPKSN LSTLSNHSLY GTKNRAFYKN  60
   61 KRNPYNRTQA LGRFDFGSLE SVLEASAVLT AIIVVHETGH FLAASLQGIR VSKFAIGFGP 120
  121 ILAKFNSNNV EYSLRAFPLG GFVGFPDNDP DSDIPVDDRN LLKNRPILDR VIVVSAGIVA 180
  181 NVIFAYAIIL TQVVSVGLPV QESFPGVLVP DVKSFSAASR DGLLPGDVIL AVDGTELSNS 240
  241 GSDSVSKVVD VVKRNPEHNV LLRIERGKES FEIRITPDKS FDGTGKIGVQ LSPNVRFGKV 300
  301 RPKNIPETFS FAGREFFGLS YNVLDSLKQT FLNFSQTASK VAGPVAIIAV GAEVARSNAD 360
  361 GLYQFAALLN LNLAVINLLP LPALDGGTLA LILLEAVRGG RKLPLEVEQG IMSSGIMLVL 420
  421 FLGLFLIVKD TLNLDFIKEM L

Type	Start	End	Confidence
Cytoplasmic	1	170	0.78
Transmembrane Helix	171	190	0.82
Non-Cytoplasmic	191	372	0.82
Transmembrane Helix	373	394	0.60
Cytoplasmic	395	409	0.41
Transmembrane Helix	410	428	0.91
Non-Cytoplasmic	429	441	0.49