YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49640918
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLKPFPSY GQDNSNGGAS GIEPVKDHRR RRSSSIISHV EPESFEDEND QQMMNNMNAN  60
   61 WVNQRGAWII HLVVIALLRL FFNLLPGMSN EWSWTLTNIA YVVGSYIMFH LIKGTPFDFN 120
  121 GGVYDNLTMW EQIDDGVLYT PTRKFLITVP IGLFLLSTHY CRYDLQLFLL NFVLTTFVAV 180
  181 VPKLPVTHRL RISIPGITGP AQIS

Type	Start	End	Confidence
Non-Cytoplasmic	1	63	0.51
Transmembrane Helix	64	85	0.84
Cytoplasmic	86	91	0.47
Transmembrane Helix	92	112	0.78
Non-Cytoplasmic	113	166	0.49
Transmembrane Helix	167	186	0.80
Cytoplasmic	187	204	0.68