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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|22651765, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.91
Topology Confidence: 0.34
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIMELAAWC RWGFLLALLP PGIAGTQVCT GTDMKLRLPA SPETHLDMLR HLYQGCQVVQ  60
   61 GNLELTYVPA NASLSFLQDI QEVQGYMLIA HNQVKRVPLQ RLRIVRGTQL FEDKYALAVL 120
  121 DNRDPQDNVA ASTPGRTPEG LRELQLRSLT EILKGGVLIR GNPQLCYQDM VLWKDVFRKN 180
  181 NQLAPVDIDT NRSRACPPCA PACKDNHCWG ESPEDCQILT GTICTSGCAR CKGRLPTDCC 240
  241 HEQCAAGCTG PKHSDCLACL HFNHSGICEL HCPALVTYNT DTFESMHNPE GRYTFGASCV 300
  301 TTCPYNYLST EVGSCTLVCP PNNQEVTAED GTQRCEKCSK PCARVCYGLG MEHLRGARAI 360
  361 TSDNVQEFDG CKKIFGSLAF LPESFDGDPS SGIAPLRPEQ LQVFETLEEI TGYLYISAWP 420
  421 DSLRDLSVFQ NLRIIRGRIL HDGAYSLTLQ GLGIHSLGLR SLRELGSGLA LIHRNAHLCF 480
  481 VHTVPWDQLF RNPHQALLHS GNRPEEDCGL EGLVCNSLCA HGHCWGPGPT QCVNCSHFLR 540
  541 GQECVEECRV WKGLPREYVS DKRCLPCHPE CQPQNSSETC FGSEADQCAA CAHYKDSSSC 600
  601 VARCPSGVKP DLSYMPIWKY PDEEGICQPC PINCTHSCVD LDERGCPAEQ RASPVTFIIA 660
  661 TVVGVLLFLI LVVVVGILIK RRRQKIRKYT MRRLLQETEL VEPLTPSGAM PNQAQMRILK 720
  721 ETELRKVKVL GSGAFGTVYK GIWIPDGENV KIPVAIKVLR ENTSPKANKE ILDEAYVMAG 780
  781 VGSPYVSRLL GICLTSTVQL VTQLMPYGCL LDHVREHRGR LGSQDLLNWC VQIAKGMSYL 840
  841 EDVRLVHRDL AARNVLVKSP NHVKITDFGL ARLLDIDETE YHADGGKVPI KWMALESILR 900
  901 RRFTHQSDVW SYGVTVWELM TFGAKPYDGI PAREIPDLLE KGERLPQPPI CTIDVYMIMV 960
  961 KCWMIDSECR PRFRELVSEF SRMARDPQRF VVIQNEDLGP SSPMDSTFYR SLLEDDDMGD1020
 1021 LVDAEEYLVP QQGFFSPDPT PGTGSTAHRR HRSSSTRSGG GELTLGLEPS EEGPPRSPLA1080
 1081 PSEGAGSDVF DGDLAMGVTK GLQSLSPHDL SPLQRYSEDP TLPLPPETDG YVAPLACSPQ1140
 1141 PEYVNQSEVQ PQPPLTPEGP LPPVRPAGAT LERPKTLSPG KNGVVKDVFA FGGAVENPEY1200
 1201 LVPREGTASP PHPSPAFSPA FDNLYYWDQN SSEQGPPPSN FEGTPTAENP EYLGLDVPV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle