YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49640655, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMSQDKSQN SLHKVSPFKS WKLTLIKFLI LFCVFFGLIS CYHFYREAQR EAGHTGAINV  60
   61 VDKSVEHPNY NLPKYTDTVS TAEEDGGVSI FVLGKRNHWN WIGNAAVAGF LISAGALTGG 120
  121 WAVASCMTIA GPACWVGIAV AMVAGTVGTI FATAAGRPGN GWTSSNAKRE ESSSFSFGDS 180
  181 TYLKVEDGRA DRVNSTITDA GLTFKGLWEV YDTVSLKKRS NNVTDTVHML QFDSPLGSHA 240
  241 AVHLNTGLDS MVNDITEDEN PGSLESTLRY TDQKVLHKRY NYFDAQWISW AWDNANNDLL 300
  301 RIAANDRGLE EEEYDSSVYN YFRDSPAWKY CWTVTDNPHP GEGEDYNQLG AENAIHGELY 360
  361 FNTYGGVDGY CNDNKDGAQC SGNACEE

Type	Start	End	Confidence
Cytoplasmic	1	22	0.68
Transmembrane Helix	23	45	0.89
Non-Cytoplasmic	46	100	0.70
Transmembrane Helix	101	124	0.88
Cytoplasmic	125	132	0.58
Transmembrane Helix	133	156	0.90
Non-Cytoplasmic	157	387	0.70