YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50302881, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMESILLILL QSVGVLYQKR YDRLHKSIYG LSYDMYALDI ISRLMMIYIS LQYMFSPLIR  60
   61 KQLANRFPLF YPLDGQKVVV NFFLLMAETG MIYFNLKVMK QLINYRKTKH IHQGFSVYLF 120
  121 WTLALCMVFH VFTLACSTVY LPESDMGKFG IFYVEHVNYI WVNVQFFQCV KFVPQISLNW 180
  181 MGNCTKGLSS KFVIMSLVSS VAGVLSLYVN STDATNFFLV PWNSYPLFVF ICQTMSVLLI 240
  241 LYQAQYLYIK NSPYLPKRT

Type	Start	End	Confidence
Cytoplasmic	1	32	0.83
Transmembrane Helix	33	51	0.75
Non-Cytoplasmic	52	77	0.77
Transmembrane Helix	78	96	0.91
Cytoplasmic	97	116	0.86
Transmembrane Helix	117	141	0.87
Non-Cytoplasmic	142	158	0.76
Transmembrane Helix	159	178	0.70
Cytoplasmic	179	187	0.78
Transmembrane Helix	188	209	0.87
Non-Cytoplasmic	210	224	0.81
Transmembrane Helix	225	248	0.85
Cytoplasmic	249	259	0.91