YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50302743, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	247	0.51
Transmembrane Helix	248	269	0.65
Cytoplasmic	270	285	0.41
Transmembrane Helix	286	300	0.61
Non-Cytoplasmic	301	317	0.55
Transmembrane Helix	318	341	0.86
Cytoplasmic	342	359	0.63
Transmembrane Helix	360	376	0.80
Non-Cytoplasmic	377	390	0.57
Transmembrane Helix	391	412	0.87
Cytoplasmic	413	419	0.69
Transmembrane Helix	420	444	0.88
Non-Cytoplasmic	445	497	0.82
Transmembrane Helix	498	520	0.85
Cytoplasmic	521	539	0.84
Transmembrane Helix	540	562	0.61
Non-Cytoplasmic	563	583	0.56
Transmembrane Helix	584	599	0.45
Cytoplasmic	600	611	0.57
Transmembrane Helix	612	636	0.82
Non-Cytoplasmic	637	643	0.67
Transmembrane Helix	644	665	0.94
Cytoplasmic	666	716	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLFGKTLS QVHPKLRTNG IGIATNHRRI SLGFDLVSRD KKNPLLRKYL RKRRHRGLRR  60
   61 GLHPDEQGSY HTLDEDFGSS VREPSVYDDL DEVLEDIDEY DEDGEPLSRT VSLPSRVSEP 120
  121 SNVSQQNLDW LLEEHERRFS SSQNSENDED EDLENGTSEQ ADVIAYDDFM HRVRQQLQQD 180
  181 FHDRAYAGGA GGSGAGGPNR RRGSLISVTS RGSVPQVFQD VGSMKEEDLS HAKVTANSEL 240
  241 KVLASYSIPL IFTFLLEQMF PVVCSLTVGH LGRTELAAVS LASMTTNITY AIFEGIATSL 300
  301 DTLCPLAYGS GNYYSVGVHM QRCIMFSFTV FIPFGFIWWW SETLLTLVMP HEPELIHMTA 360
  361 KFLRVSILGA PAYIIFESLK RFLQAQGIFD AGIYVLMICA PWNMFVSYTL VWNERIGMGF 420
  421 IGAPIAVVLN FWTMVTLLSL YAIYVDGYKC WGGFNSKSLK HWKALSELAV PGIVMLEAED 480
  481 LSYEILTLFS SYFGTPYLAA QSAVSTTAAL LYMIPFSVGI SSSTRIGNFI GCRRPNCAKL 540
  541 SAELGIGSSL FVGLLNCLII NVDKRSIANI YTKDEEVIQL MCQLLPLVGI VEIFDSLNAI 600
  601 SGSCLRGLGL QYIGSIVNLV VYHLVAIPLG IFLAWYMDMK LNGLWIGIGV GMLIIGLVQS 660
  661 YYVIFADWND VMERAEKRRD HDRDADSDTD SLESVSSVEA YSDSESDSES SPLLLR